RNAJunction Database - Junction Profile:5211
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5211: 1Q8N_j2_A-C6_A-G29

Primary Citation: (from PDB entry 1Q8N)

J.FLINDERS S.C.DEFINA D.M.BRACKETT C.BAUGH C.WILSON T.DIECKMANN RECOGNITION OF PLANAR AND NONPLANAR LIGANDS IN THE MALACHITE GREEN-RNA APTAMER COMPLEX. CHEMBIOCHEM V. 5 62 2004

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1F1T j2 A-C6 A-G29 
NC-IUBMB Classification:2HS3Cluster Page
Angles: 166°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.56192Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGAAUGG 7nt

Strand 2: Chain A: CCCG 4nt

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