RNAJunction Database - Junction Profile:5580
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5580: 1S1I_j2_3-C1893_3-U1939

Primary Citation: (from PDB entry 1S1I)

C.M.SPAHN M.G.GOMEZ-LORENZO R.A.GRASSUCCI R.JORGENSEN G.R.ANDERSEN R.BECKMANN P.A.PENCZEK J.P.G.BALLESTA J.FRANK DOMAIN MOVEMENTS OF ELONGATION FACTOR EEF2 AND THE EUKARYOTIC 80S RIBOSOME FACILITATE TRNA TRANSLOCATION. EMBO J. V. 23 1008 2004

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1JJ2 j2 0-C1893 0-U1939 
NC-IUBMB Classification:HS4HS4Cluster Page
Angles: 157°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.52567Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 3: GCCCAGUGCA 10nt

Strand 2: Chain 3: UGUCAACGGC 10nt

Valid XHTML 1.0 Transitional