RNAJunction Database - Junction Profile:5672
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5672: 1S1I_j5_3-G641_3-C759_3-G902_3-G1300_3-G1354

Primary Citation: (from PDB entry 1S1I)

C.M.SPAHN M.G.GOMEZ-LORENZO R.A.GRASSUCCI R.JORGENSEN G.R.ANDERSEN R.BECKMANN P.A.PENCZEK J.P.G.BALLESTA J.FRANK DOMAIN MOVEMENTS OF ELONGATION FACTOR EEF2 AND THE EUKARYOTIC 80S RIBOSOME FACILITATE TRNA TRANSLOCATION. EMBO J. V. 23 1008 2004

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:1JJ2 j5 0-G641 0-C759 0-G902 0-G1300 0-G1354 
NC-IUBMB Classification:Cluster Page
Angles: 66:67:87:94:102:107:114:117:122:161°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.45781Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 3: ACGACC 6nt

Strand 2: Chain 3: GGGAGUGU 8nt

Strand 3: Chain 3: GGUUCC 6nt

Strand 4: Chain 3: GGCG 4nt

Strand 5: Chain 3: CGAAAAUCC 9nt

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