RNAJunction Database - Junction Profile:5839
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5839: 1SYZ_j2_A-C5_A-A18

Primary Citation: (from PDB entry 1SYZ)

N.J.REITER H.BLAD F.ABILDGAARD S.E.BUTCHER DYNAMICS IN THE U6 RNA INTRAMOLECULAR STEM-LOOP: A BASE FLIPPING CONFORMATIONAL CHANGE. BIOCHEMISTRY V. 43 13739 2004

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1LC6 j2 A-C5 A-A18 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 174°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.04022Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GGAUGAA 7nt

Strand 2: Chain A: UUCCCC 6nt

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