RNAJunction Database - Junction Profile:8420
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 8420: 1XNR_j4_A-G115_A-U239_A-A274_A-C311

Primary Citation: (from PDB entry 1XNR)

F.V.MURPHY V.RAMAKRISHNAN STRUCTURE OF A PURINE-PURINE WOBBLE BASE PAIR IN THE DECODING CENTER OF THE RIBOSOME. NAT.STRUCT.MOL.BIOL. V. 11 1251 2004

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:4-wayCluster:1HNW j4 A-G115 A-U239 A-A274 A-C311 
NC-IUBMB Classification:Cluster Page
Angles: 19:65:73:99:108:173°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.80714Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGUCCCAUCAGCUAGUUG 18nt

Strand 2: Chain A: GUGAGUAACGCG 12nt

Strand 3: Chain A: CAAGGCGACGACGGGUAGCC 20nt

Strand 4: Chain A: GGCCAC 6nt

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