RNAJunction Database - Junction Profile:8442

Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 8442: 1Y39_j3_D-G306_D-A326_D-U351

Primary Citation: (from PDB entry 1Y39)

M.S.DUNSTAN D.GUHATHAKURTA D.E.DRAPER G.L.CONN COEVOLUTION OF PROTEIN AND RNA STRUCTURES WITHIN A HIGHLY CONSERVED RIBOSOMAL DOMAIN CHEM.BIOL. V. 12 201 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:3-wayCluster:1Y39 j3 C-G106 C-A126 C-U151 
NC-IUBMB Classification:Cluster Page
Angles: 51:148:149°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.63491Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain D: GCAAUCAUUUAAAGAGUGC 19nt

Strand 2: Chain D: AGGAUGUAUGC 11nt

Strand 3: Chain D: GCUCACU 7nt

Valid XHTML 1.0 Transitional