RNAJunction Database - Junction Profile:8599
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 8599: 1Y99_j2_A-A16_B-G7

Primary Citation: (from PDB entry 1Y99)

E.ENNIFAR M.YUSUPOV P.WALTER R.MARQUET B.EHRESMANN C.EHRESMANN P.DUMAS THE CRYSTAL STRUCTURE OF THE DIMERIZATION INITIATION SITE OF GENOMIC HIV-1 RNA REVEALS AN EXTENDED DUPLEX WITH TWO ADENINE BULGES STRUCTURE FOLD.DES. V. 7 1439 1999

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1Y6S j2 A-A16 B-G7 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 167°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.35127Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: ACACAG 6nt

Strand 2: Chain B: CUGAGGU 7nt

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