RNAJunction Database - Junction Profile:9404
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9404: 1YL3_j2_A-A241_A-A255

Primary Citation: (from PDB entry 1YL3)

L.JENNER P.ROMBY B.REES C.SCHULZE-BRIESE M.SPRINGER C.EHRESMANN B.EHRESMANN D.MORAS G.YUSUPOVA M.YUSUPOV TRANSLATIONAL OPERATOR OF MRNA ON THE RIBOSOME: HOW REPRESSOR PROTEINS EXCLUDE RIBOSOME BINDING. SCIENCE V. 308 120 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:2B9N j2 A-A241 A-A255 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 137°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.05198Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UGAGUAG 7nt

Strand 2: Chain A: CGAAAG 6nt

Valid XHTML 1.0 Transitional