RNAJunction Database - Junction Profile:9494
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9494: 1YNE_j2_A-U6_A-A23

Primary Citation: (from PDB entry 1YNE)

C.MARIS J.MASSE F.H.ALLAIN A.CHESTER N.NAVARATNAM NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEMENTARY FACTOR. RNA V. 11 173 2005

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1YLG j2 A-U6 A-A23 
NC-IUBMB Classification:HS1HS2Cluster Page
Angles: 139°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.77096Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UCAGUAUA 8nt

Strand 2: Chain A: UAUAUGA 7nt

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