RNAJunction Database - Junction Profile:9896
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9896: 2AVY_j5_A-C58_A-G107_A-A315_A-G337_A-G351

Primary Citation: (from PDB entry 2AVY)

B.S.SCHUWIRTH M.A.BOROVINSKAYA C.W.HAU W.ZHANG A.VILA- SANJURJO J.M.HOLTON J.H.D.CATE STRUCTURES OF THE BACTERIAL RIBOSOME AT 3.5 A RESOLUTION SCIENCE V. 310 827 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:1VS5 j5 A-C58 A-G107 A-A315 A-G337 A-G351 
NC-IUBMB Classification:Cluster Page
Angles: 35:69:72:82:105:105:115:120:125:173°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.82179Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GCGGACGGGU 10nt

Strand 2: Chain A: UGCAAGU 7nt

Strand 3: Chain A: ACACUG 6nt

Strand 4: Chain A: CAGACU 6nt

Strand 5: Chain A: AGGCAGCA 8nt

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