RNAJunction Database - Junction Profile:10402
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10402: 2D18_j2_A-A5_B-C12

Primary Citation: (from PDB entry 2D18)

S.BABA K.TAKAHASHI S.NOGUCHI H.TAKAKU Y.KOYANAGI N.YAMAMOTO G.KAWAI SOLUTION RNA STRUCTURES OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP AND EXTENDED-DUPLEX DIMERS J.BIOCHEM.(TOKYO) V. 138 583 2005

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:2D1A j2 A-C22 B-A15 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 154°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.42723Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UGAAGUG 7nt

Strand 2: Chain B: CACACG 6nt

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