RNAJunction Database - Junction Profile:10500
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10500: 2E5L_j5_A-C58_A-G107_A-A315_A-C337_A-G350

Primary Citation: (from PDB entry 2E5L)

T.KAMINISHI D.N.WILSON C.TAKEMOTO J.M.HARMS M.KAWAZOE F.SCHLUENZEN K.HANAWA-SUETSUGU M.SHIROUZU P.FUCINI S.YOKOYAMA RIKEN STRUCTURAL GENOMICS/PROTEO A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE-DALGARNO INTERACTION STRUCTURE V. 15 289 2007

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:2HGR j5 A-C58 A-G107 A-A315 A-C337 A-G350 
NC-IUBMB Classification:Cluster Page
Angles: 37:64:70:82:106:109:113:118:127:172°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.87905Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GCGGACGGGU 10nt

Strand 2: Chain A: UGCAAGU 7nt

Strand 3: Chain A: ACAGGG 6nt

Strand 4: Chain A: CCCACUC 7nt

Strand 5: Chain A: GAGGCAGCA 9nt

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