RNAJunction Database - Junction Profile:10600
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10600: 2FCZ_j4_C-G7_C-C15_D-G7_D-C15

Primary Citation: (from PDB entry 2FCZ)

E.ENNIFAR J.C.PAILLART R.MARQUET P.DUMAS TARGETING THE DIMERIZATION INITIATION SITE OF HIV-1 RNA WITH AMINOGLYCOSIDES: FROM CRYSTAL TO CELL. NUCLEIC ACIDS RES. V. 34 2328 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:4-wayCluster:1Y3S j4 A-G7 A-C15 B-G7 B-C15 
NC-IUBMB Classification:Cluster Page
Angles: 5:9:163:164:170:171°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.52847Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain C: UGAAGU 6nt

Strand 2: Chain C: ACACA 5nt

Strand 3: Chain D: ACACA 5nt

Strand 4: Chain D: UGAAGU 6nt

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