RNAJunction Database - Junction Profile:10626
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10626: 2GDI_j2_Y-C23_Y-A35

Primary Citation: (from PDB entry 2GDI)

A.SERGANOV STRUCTURAL BASIS FOR GENE REGULATION BY A THIAMINE PYROPHOSPHATE-SENSING RIBOSWITCH. NATURE V. 441 1167 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:2GDI j2 Y-C23 Y-A35 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 176°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.42886Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain Y: GCCCUUC 7nt

Strand 2: Chain Y: GAAGGC 6nt

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