RNAJunction Database - Junction Profile:10638

Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10638: 2GM0_j2_A-G4_B-A64

Primary Citation: (from PDB entry 2GM0)

N.B.ULYANOV A.MUJEEB Z.DU M.TONELLI T.G.PARSLOW T.L.JAMES NMR STRUCTURE OF THE FULL-LENGTH LINEAR DIMER OF STEM-LOOP-1 RNA IN THE HIV-1 DIMER INITIATION SITE. J.BIOL.CHEM. V. 281 16168 2006

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:2GM0 j2 A-G4 B-A64 
NC-IUBMB Classification:2HS2Cluster Page
Angles: 155°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.90348Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: ACGGCU 6nt

Strand 2: Chain B: AGAGGCGU 8nt

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