RNAJunction Database - Junction Profile:11712
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 11712: 2I2U_j5_A-C569_A-C651_A-G752_A-C811_A-C879

Primary Citation: (from PDB entry 2I2U)

V.BERK W.ZHANG R.D.PAI J.H.D.CATE STRUCTURAL BASIS FOR MRNA AND TRNA POSITIONING ON THE RIBOSOME. PROC.NATL.ACAD.SCI.USA V. 103 15830 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:2I2U j5 A-C569 A-C651 A-G752 A-C811 A-C879 
NC-IUBMB Classification:Cluster Page
Angles: 22:54:66:84:95:111:125:146:152:173°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.74052Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGCUUGAG 8nt

Strand 2: Chain A: GGCGUAAAGCGCACGCAGGCGGUU 24nt

Strand 3: Chain A: CUGACGCUCAGGUGCGAAAGC 21nt

Strand 4: Chain A: GCCGUAAACGAUGUC 15nt

Strand 5: Chain A: GACCGCC 7nt

Valid XHTML 1.0 Transitional