RNAJunction Database - Junction Profile:12
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 12: 1AQO_j2_A-U9_A-U20

Primary Citation: (from PDB entry 1AQO)

K.J.ADDESS A.PARDI STRUCTURE AND DYNAMICS OF THE IRON RESPONSIVE ELEMENT RNA: IMPLICATIONS FOR BINDING OF THE RNA BY IRON REGULATORY BINDING PROTEINS J.MOL.BIOL. V. 274 72 1997

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1AQO j2 A-U9 A-U20 
NC-IUBMB Classification:HS1HS1Cluster Page
Angles: 168°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.25109Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UUCAA 5nt

Strand 2: Chain A: UUGGA 5nt

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