RNAJunction Database - Junction Profile:12583
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 12583: 2TPK_j2_A-A15_A-U25

Primary Citation: (from PDB entry 2TPK)

J.A.HOLLAND M.R.HANSEN Z.DU D.W.HOFFMAN COAXIAL STACKING OF HELICAL STEMS IN A PSEUDOKNOT MOTIF: AN NMR INVESTIGATION OF THE RNA PSEUDOKNOT AT THE 5' END OF THE GENE32 MRNA OF BACTERIOPHAGE T2 RNA V. 5 257 1999

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:2TPK j2 A-A15 A-U25 
NC-IUBMB Classification:HS1HS2Cluster Page
Angles: 172°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.2627Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AUCGUC 6nt

Strand 2: Chain A: GAGGU 5nt

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