RNAJunction Database - Junction Profile:12847
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 12847: 397D_j2_A-A22_B-C39

Primary Citation: (from PDB entry 397D)

J.A.IPPOLITO T.A.STEITZ A 1.3-A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS-ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION-DEPENDENT BULGE CONFORMATION PROC.NAT.ACAD.SCI.USA V. 95 9819 1998

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:397D j2 A-A22 B-C39 
NC-IUBMB Classification:2HS3Cluster Page
Angles: 179°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.53939Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGAUCUGAG 9nt

Strand 2: Chain B: CUCUCU 6nt

Valid XHTML 1.0 Transitional