RNAJunction Database - Junction Profile:13
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 13: 1ARJ_j2_N-A22_N-C39

Primary Citation: (from PDB entry 1ARJ)

F.ABOUL-ELA G.VARANI J.KARN THE STRUCTURE OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-1 TAR RNA REVEALS PRINCIPLES OF RNA RECOGNITION BY TAT PROTEIN J.MOL.BIOL. V. 253 313 1995

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1ARJ j2 N-A22 N-C39 
NC-IUBMB Classification:2HS3Cluster Page
Angles: 166°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.07481Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain N: AGAUCUGAG 9nt

Strand 2: Chain N: CUCUCU 6nt

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