RNAJunction Database - Junction Profile:1363
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 1363: 1IK5_j2_A-U5_B-U19

Primary Citation: (from PDB entry 1IK5)

J.DENG Y.XIONG C.SUDARSANAKUMAR K.SHI M.SUNDARALINGAM CRYSTAL STRUCTURES OF TWO FORMS OF A 14MER RNA/DNA CHIMER DUPLEX WITH DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE RNA V. 7 1425 2001

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1IK5 j2 A-U5 B-U19 
NC-IUBMB Classification:HS4HS4Cluster Page
Angles: 176°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.6607Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UAUUUCGGUA 10nt

Strand 2: Chain B: UAUUUUGGUA 10nt

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