RNAJunction Database - Junction Profile:1641
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 1641: 1JU1_j2_A-G7_B-C38

Primary Citation: (from PDB entry 1JU1)

F.GIRARD F.BARBAULT G.LANCELOT DIMER INITIATION SEQUENCE OF HIV-1LAI GENOMIC RNA: NMR SOLUTION STRUCTURE OF THE EXTENDED DUPLEX J.BIOMOL.STRUCT.DYN. V. 16 1145 1999

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1JU1 j2 A-G7 B-C38 
NC-IUBMB Classification:HS1HS2Cluster Page
Angles: 175°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.99027Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CUGAAGCG 8nt

Strand 2: Chain B: CGCACGG 7nt

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