RNAJunction Database - Junction Profile:184
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 184: 1EBR_j2_A-G5_A-G20

Primary Citation: (from PDB entry 1EBR)

R.D.PETERSON J.FEIGON STRUCTURAL CHANGE IN REV RESPONSIVE ELEMENT RNA OF HIV-1 ON BINDING REV PEPTIDE J.MOL.BIOL. V. 264 863 1996

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1EBR j2 A-G5 A-G20 
NC-IUBMB Classification:HS3HS5Cluster Page
Angles: 152°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.24656Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CUGACGGUACA 11nt

Strand 2: Chain A: UGGGCGCAG 9nt

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