RNAJunction Database - Junction Profile:2928
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 2928: 1M5L_j2_A-C4_A-G33

Primary Citation: (from PDB entry 1M5L)

J.GALLEGO J.GREATOREX G.VARANI A.LEVER STRUCTURE AND STABILITY OF WILD-TYPE AND MUTANT RNA INTERNAL LOOPS FROM THE SL-1 DOMAIN OF THE HIV-1 PACKAGING SIGNAL J.MOL.BIOL. V. 322 543 2002

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1M5L j2 A-C4 A-G33 
NC-IUBMB Classification:HS1HS3Cluster Page
Angles: 120°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.79414Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGCAGGACU 9nt

Strand 2: Chain A: AGGGGCG 7nt

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