RNAJunction Database - Junction Profile:3502
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 3502: 1NBK_j2_A-C12_A-G22

Primary Citation: (from PDB entry 1NBK)

A.MATSUGAMI S.KOBAYASHI K.OUHASHI S.UESUGI R.YAMAMOTO K.TAIRA S.NISHIKAWA P.K.R.KUMAR M.KATAHIRA STRUCTURAL BASIS OF THE HIGHLY EFFICIENT TRAPPING OF THE HIV TAT PROTEIN BY AN RNA APTAMER STRUCTURE V. 11 533 2003

Experimental Method: NMR

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1NBK j2 A-C12 A-G22 
NC-IUBMB Classification:2HS2Cluster Page
Angles: 154°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.66092Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGGUCGAU 8nt

Strand 2: Chain A: AUCCCG 6nt

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