RNAJunction Database - Junction Profile:3503
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 3503: 1NBK_j2_A-C6_A-C28

Primary Citation: (from PDB entry 1NBK)

A.MATSUGAMI S.KOBAYASHI K.OUHASHI S.UESUGI R.YAMAMOTO K.TAIRA S.NISHIKAWA P.K.R.KUMAR M.KATAHIRA STRUCTURAL BASIS OF THE HIGHLY EFFICIENT TRAPPING OF THE HIV TAT PROTEIN BY AN RNA APTAMER STRUCTURE V. 11 533 2003

Experimental Method: NMR

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1NBK j2 A-C6 A-C28 
NC-IUBMB Classification:2HS2Cluster Page
Angles: 162°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.07271Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGCUUGAU 8nt

Strand 2: Chain A: AUCGCU 6nt

Valid XHTML 1.0 Transitional