RNAJunction Database - Junction Profile:4296
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4296: 1OSW_j2_A-G4_A-A16

Primary Citation: (from PDB entry 1OSW)

Y.YUAN D.J.KERWOOD A.C.PAOLETTI M.F.SHUBSDA P.N.BORER STEM OF SL1 RNA IN HIV-1: STRUCTURE AND NUCLEOCAPSID PROTEIN BINDING FOR A 1X3 INTERNAL LOOP BIOCHEMISTRY V. 42 5259 2003

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1OSW j2 A-G4 A-A16 
NC-IUBMB Classification:2HS2Cluster Page
Angles: 139°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.75677Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGAGGCUC 8nt

Strand 2: Chain A: GAGGCG 6nt

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