RNAJunction Database - Junction Profile:4739
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4739: 1PNY_j4_0-U609_0-C635_0-C646_0-G660

Primary Citation: (from PDB entry 1PNY)

A.VILA-SANJURJO W.K.RIDGEWAY V.SEYMANER W.ZHANG S.SANTOSO K.YU J.H.D.CATE X-RAY CRYSTAL STRUCTURES OF THE WT AND A HYPER-ACCURATE RIBOSOME FROM ESCHERICHIA COLI PROC.NAT.ACAD.SCI.USA V. 100 8682 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:4-wayCluster:1PNY j4 0-U609 0-C635 0-C646 0-G660 
NC-IUBMB Classification:Cluster Page
Angles: 24:72:79:83:94:123°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.94694Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: GCGGAGC 7nt

Strand 2: Chain 0: GUGCGAGC 8nt

Strand 3: Chain 0: GCGAGUC 7nt

Strand 4: Chain 0: GGCGGCAUUAGUAC 14nt

Valid XHTML 1.0 Transitional