RNAJunction Database - Junction Profile:5220
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Entry # 5220: 1QD3_j2_A-A22_A-C39

Primary Citation: (from PDB entry 1QD3)

C.FABER H.STICHT P.ROESCH STRUCTURAL REARRANGEMENTS OF HIV-1 TAT-RESPONSIVE RNA UPON BINDING OF NEOMYCIN B J.BIOL.CHEM. V. 275 20660 2000

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1QD3 j2 A-A22 A-C39 
NC-IUBMB Classification:2HS3Cluster Page
Angles: 171°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.5405Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGAUUUGAG 9nt

Strand 2: Chain A: CUCUCU 6nt

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