RNAJunction Database - Junction Profile:5530
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5530: 1S1H_j2_A-G925_A-U1390

Primary Citation: (from PDB entry 1S1H)

C.M.SPAHN M.G.GOMEZ-LORENZO R.A.GRASSUCCI R.JORGENSEN G.R.ANDERSEN R.BECKMANN P.A.PENCZEK J.P.G.BALLESTA J.FRANK DOMAIN MOVEMENTS OF ELONGATION FACTOR EEF2 AND THE EUKARYOTIC 80S RIBOSOME FACILITATE TRNA TRANSLOCATION. EMBO J. V. 23 1008 2004

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1S1H j2 A-G925 A-U1390 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 166°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 2.75113Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: ACGGGGG 7nt

Strand 2: Chain A: CCUUGU 6nt

Valid XHTML 1.0 Transitional