RNAJunction Database - Junction Profile:5670
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5670: 1S1I_j5_3-A912_3-G1071_3-A1086_3-C1267_3-G1290

Primary Citation: (from PDB entry 1S1I)

C.M.SPAHN M.G.GOMEZ-LORENZO R.A.GRASSUCCI R.JORGENSEN G.R.ANDERSEN R.BECKMANN P.A.PENCZEK J.P.G.BALLESTA J.FRANK DOMAIN MOVEMENTS OF ELONGATION FACTOR EEF2 AND THE EUKARYOTIC 80S RIBOSOME FACILITATE TRNA TRANSLOCATION. EMBO J. V. 23 1008 2004

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:1FFK j5 0-A912 0-G1071 0-A1086 0-C1267 0-G1290 
NC-IUBMB Classification:Cluster Page
Angles: 30:44:51:65:105:125:128:134:149:178°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.90148Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 3: AGGAG 5nt

Strand 2: Chain 3: GAAA 4nt

Strand 3: Chain 3: CAGAGA 6nt

Strand 4: Chain 3: UCCG 4nt

Strand 5: Chain 3: CGAGUA 6nt

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