RNAJunction Database - Junction Profile:5791
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5791: 1S9S_j2_A-A314_A-C345

Primary Citation: (from PDB entry 1S9S)

V.D'SOUZA A.DEY D.HABIB M.F.SUMMERS NMR STRUCTURE OF THE 101-NUCLEOTIDE CORE ENCAPSIDATION SIGNAL OF THE MOLONEY MURINE LEUKEMIA VIRUS. J.MOL.BIOL. V. 337 427 2004

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1S9S j2 A-A314 A-C345 
NC-IUBMB Classification:HS2HS5Cluster Page
Angles: 144°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.99847Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GGACCCGUGGU 11nt

Strand 2: Chain A: ACCCGGCC 8nt

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