RNAJunction Database - Junction Profile:5836
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5836: 1SM1_j5_0-A832_0-G951_0-C982_0-G1174_0-U1197

Primary Citation: (from PDB entry 1SM1)

J.M.HARMS F.SCHLUENZEN P.FUCINI H.BARTELS A.YONATH ALTERATIONS AT THE PEPTIDYL TRANSFERASE CENTRE OF THE RIBOSOME INDUCED BY THE SYNERGISTIC ACTION OF THE STREPTOGRAMINS DALFOPRISTIN AND QUINUPRISTIN. BMC BIOL. V. 2 4 2004

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1SM1 j5 0-A832 0-G951 0-C982 0-G1174 0-U1197 
NC-IUBMB Classification:Cluster Page
Angles: 50:55:63:101:104:109:129:138:147:162°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.1656Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: GGGAGUGAGGC 11nt

Strand 2: Chain 0: CGAAAUGUAUUGAGGUACAGCCUC 24nt

Strand 3: Chain 0: GCCGAGAGGGAAACAACCCAGACCA 25nt

Strand 4: Chain 0: UGGAUUCA 8nt

Strand 5: Chain 0: UGUCUGGUAG 10nt

Valid XHTML 1.0 Transitional