RNAJunction Database - Junction Profile:5870
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5870: 1UTS_j2_B-A22_B-C39

Primary Citation: (from PDB entry 1UTS)

B.DAVIS A.I.H.MURCHIE F.ABOUL-ELA J.KARN STRUCTURE-BASED DRUG DESIGN TARGETING AN INACTIVE RNA CONFORMATION: EXPLOITING THE FLEXIBILITY OF HIV-1 TAR RNA J.MOL.BIOL. V. 236 625 2004

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1UTS j2 B-A22 B-C39 
NC-IUBMB Classification:2HS3Cluster Page
Angles: 154°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.4363Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: AGAUCUGAG 9nt

Strand 2: Chain B: CUCUCU 6nt

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