RNAJunction Database - Junction Profile:5872
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5872: 1UUI_j2_B-A22_B-C39

Primary Citation: (from PDB entry 1UUI)

B.DAVIS M.AFSHAR G.VARANI J.KARN A.I.H.MURCHIE G.LENTZEN M.J.DRYSDALE A.J.POTTER J.BOWER F.ABOUL-ELA RATIONAL DESIGN OF INHIBITORS OF HIV-1 TAR RNA THROUGH THE STABILISATION OF ELECTROSTATIC "HOT SPOTS" J.MOL.BIOL. V. 336 343 2004

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1UUI j2 B-A22 B-C39 
NC-IUBMB Classification:2HS3Cluster Page
Angles: 142°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.47067Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: AGAUCUGAG 9nt

Strand 2: Chain B: CUCUCU 6nt

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