RNAJunction Database - Junction Profile:635
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 635: 1HNW_j5_A-C58_A-G107_A-A315_A-C337_A-G351

Primary Citation: (from PDB entry 1HNW)

D.E.BRODERSEN W.M.CLEMONS JR. A.P.CARTER R.MORGAN-WARREN B.T.WIMBERLY V.RAMAKRISHNAN THE STRUCTURAL BASIS FOR THE ACTION OF THE ANTIBIOTICS TETRACYCLINE, PACTAMYCIN, AND HYGROMYCIN B ON THE 30S RIBOSOMAL SUBUNIT CELL (CAMBRIDGE,MASS.) V. 103 1143 2000

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1IBM j5 A-C58 A-G107 A-A315 A-C337 A-G351 
NC-IUBMB Classification:Cluster Page
Angles: 39:64:73:80:109:110:117:118:127:170°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.7446Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GCGGACGGGU 10nt

Strand 2: Chain A: UGCAAGU 7nt

Strand 3: Chain A: ACAGGG 6nt

Strand 4: Chain A: CCCACU 6nt

Strand 5: Chain A: AGGCAGCA 8nt

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