RNAJunction Database - Junction Profile:8581
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 8581: 1Y69_j5_0-C46_0-G115_0-C128_0-U142_0-A153

Primary Citation: (from PDB entry 1Y69)

D.N.WILSON F.SCHLUENZEN J.M.HARMS T.YOSHIDA T.OHKUBO R.ALBRECHT J.BUERGER Y.KOBAYASHI P.FUCINI X-RAY CRYSTALLOGRAPHY ON RIBOSOME RECYCLING: MECHANISM OF BINDING AND ACTION OF RRF ON THE 50S RIBOSOMAL SUBUNIT EMBO J. V. 24 251 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1NJP j5 0-C46 0-G115 0-C128 0-U142 0-A153 
NC-IUBMB Classification:Cluster Page
Angles: 27:74:77:87:97:102:123:156:160:167°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.21432Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: CGAAUGG 7nt

Strand 2: Chain 0: CCGAUGAAG 9nt

Strand 3: Chain 0: CCAC 4nt

Strand 4: Chain 0: GUAUC 5nt

Strand 5: Chain 0: GAUGG 5nt

Valid XHTML 1.0 Transitional