RNAJunction Database - Junction Profile:8601
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 8601: 1YG3_j2_A-G12_A-C27

Primary Citation: (from PDB entry 1YG3)

P.V.CORNISH M.HENNIG D.P.GIEDROC A LOOP 2 CYTIDINE-STEM 1 MINOR GROOVE INTERACTION AS A POSITIVE DETERMINANT FOR PSEUDOKNOT-STIMULATED -1 RIBOSOMAL FRAMESHIFTING PROC.NATL.ACAD.SCI.USA V. 102 12694 2005

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1YG3 j2 A-G12 A-C27 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 158°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.24494Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGACC 5nt

Strand 2: Chain A: ACCG 4nt

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