RNAJunction Database - Junction Profile:9493
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9493: 1YNC_j2_A-A7_A-A23

Primary Citation: (from PDB entry 1YNC)

C.MARIS J.MASSE F.H.ALLAIN A.CHESTER N.NAVARATNAM NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEMENTARY FACTOR. RNA V. 11 173 2005

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1YNC j2 A-A7 A-A23 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 147°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.82816Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UCAGUAU 7nt

Strand 2: Chain A: AUAUGA 6nt

Valid XHTML 1.0 Transitional