RNAJunction Database - Junction Profile:10594

Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10594: 2F4X_j4_A-G8_A-C16_B-G32_B-C40

Primary Citation: (from PDB entry 2F4X)

F.KIEKEN F.PAQUET F.BRULE J.PAOLETTI G.LANCELOT A NEW NMR SOLUTION STRUCTURE OF THE SL1 HIV-1LAI LOOP-LOOP DIMER NUCLEIC ACIDS RES. V. 34 343 2006

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:4-wayCluster:2F4X j4 A-G8 A-C16 B-G32 B-C40 
NC-IUBMB Classification:Cluster Page
Angles: 26:26:136:162:162:172°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.9446Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UGAAGC 6nt

Strand 2: Chain A: GCACG 5nt

Strand 3: Chain B: GCACG 5nt

Strand 4: Chain B: UGAAGC 6nt

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