RNAJunction Database - Junction Profile:19
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 19: 1BIV_j2_A-G9_A-U24

Primary Citation: (from PDB entry 1BIV)

X.YE R.A.KUMAR D.J.PATEL MOLECULAR RECOGNITION IN THE BOVINE IMMUNODEFICIENCY VIRUS TAT PEPTIDE - TAR RNA COMPLEX CHEM.BIOL. V. 2 827 1995

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1BIV j2 A-G9 A-U24 
NC-IUBMB Classification:HS1HS3Cluster Page
Angles: 142°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.65246Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UCGUGUAGC 9nt

Strand 2: Chain A: GCUCCGA 7nt

Valid XHTML 1.0 Transitional